Snakemake

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    Related websites

    Snakemake | Snakemake 8.16.0 documentation - Read the Docs

    WEBsnakemake. The snakemake workflow management system is a tool to create reproducible and scalable data analyses. Workflows are described via a human readable, Python based language. They can be seamlessly scaled to server, cluster, grid and cloud environments, without the need to modify the workflow definition.

    Snakemake.readthedocs.io


    Snakemake 入门教程(创建一个简单的工作流)-CSDN博客

    WEBNov 10, 2021 · 通过 snakemake,用户可以组织和控制复杂的数据分析流程,实现自动化处理,从而提高研究的可重复性和效率。此外,由于其高度的可配置性和扩展性,snakemake 也被用于非生物信息学的数据分析项目中。snakemake 工作流是由一系列的规则组成

    Blog.csdn.net


    snakemake使用笔记 - 简书

    WEBsnakemake是一个用来编写任务流程的工具,用python编写的,因此其执行的流程脚本也比较通俗易懂,易于理解。 一、从一个简单的例子开始 1、安装snakemake

    Jianshu.com


    GitHub - snakemake/snakemake: This is the development home …

    WEBThe snakemake workflow management system is a tool to create reproducible and scalable data analyses. snakemake is highly popular, with on average more than 7 new citations per week in 2021, and almost 400k downloads. Workflows are described via a human readable, Python based language.

    Github.com


    Snakemake

    WEBsnakemake offers semantic helper functions for lookups, branching and aggregation that avoid the need for plain Python code as shown above, and allow to express complex logic in a human-readable and self-contained way.

    Snakemake.github.io


    从零开始用snakemake搭建完整的甲基化生信分析流程(第一章) …

    WEBMar 31, 2022 · 通过 snakemake,用户可以组织和控制复杂的数据分析流程,实现自动化处理,从而提高研究的可重复性和效率。此外,由于其高度的可配置性和扩展性,snakemake 也被用于非生物信息学的数据分析项目中。snakemake 工作流是由一系列的

    Blog.csdn.net


    Snakemake:简单好用的生信流程搭建工具 | | 百迈客生物

    WEBSep 1, 2020 · snakemake的用法介绍. snakemake 是基于 Python 的一款工具,所以它也继承了 Python 语言简单易读、逻辑清晰、便于维护的特点,同时它还支持 Python 语法,非常适合新手用户。. snakemake 的基本组成单位叫“规则”,即 rule;每个 rule 里面又有多个元素(input、output、run等

    Biomarker.com.cn


    Snakemake 常用参数以及进阶用法介绍 - CSDN博客

    WEBNov 12, 2021 · 通过 snakemake,用户可以组织和控制复杂的数据分析流程,实现自动化处理,从而提高研究的可重复性和效率。此外,由于其高度的可配置性和扩展性,snakemake 也被用于非生物信息学的数据分析项目中。snakemake 工作流是由一系列的

    Blog.csdn.net


    使用snakemake编写生信分析流程-腾讯云开发者社区-腾讯云

    WEBThe snakemake workflow management system is a tool to create reproducible and scalable data analyses. Workflows are described via a human readable, Python based language. They can be seamlessly scaled to server, cluster, grid and cloud environments, without the need to modify the workflow definition.

    Cloud.tencent.com


    snakemake--我最喜欢的流程管理工具 - 简书

    WEBJan 29, 2018 · snakemake以{sample}.fa形式进行文件名通配,用{wildcards.sample}获取sample的实际文件名; snakemake用expand()生成多个文件名,本质是Python的列表推导式; snakemake可以在规则外直接写Python代码,在规则内的run里也可以写Python代码。

    Jianshu.com


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